circRNA basic information
circBase ID: hsa_circ_0027478
Name: hsa_circ_NUP107
Synonym: circ_0027478
Host Gene: NUP107
Genomic location(hg19): chr12:69109406-69125499:+
Genomic location(hg38): chr12:68715626-68731719:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: AFP, PTEN, PI3K/Akt pathway
Associated microRNA: miR-1236-3p
Biological function: Oncogenic properties in HCC; may promote HCC progression by sequestering miR-1236-3p (bioinformatics-supported).
Molecular mechanism: Bioinformatically predicted ceRNA/miRNA sponge mechanism involving miR-1236-3p and downstream AFP/PTEN/PI3K/Akt; not experimentally validated here.
Biological pathway or process:

ceRNA regulation (other); PI3K/AKT (other)

Detected method:
Q
Validation methods:

divergent primers PCR; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Plasma biomarker for HCC diagnosis (AUC = 0.80) and for distinguishing metastatic vs non-metastatic HCC (AUC = 0.72); positively correlates with tumor size, AFP and disease severity.

Description:

Plasma circ_0027478 is significantly up-regulated in HCC and has moderate diagnostic/prognostic value, including distinguishing metastatic from non-metastatic cases. Bioinformatics suggests it is cytoplasmic and may act as a miRNA sponge for miR-1236-3p, potentially impacting the AFP/PTEN/PI3K-Akt axis, but this mechanism was not experimentally validated in the study.

Confidence score:

0.559

Other information
Title:

Preliminary Evaluation of Plasma circ_0009910, circ_0027478, and miR-1236-3p as Diagnostic and Prognostic Biomarkers in Hepatocellular Carcinoma.

Journal: International journal of molecular sciences
Published: 2025
PubMed ID: 40429981
Study type:

combined biological and clinical study

Data availability: GSE94508; GSE97332
Code availability: -