circRNA basic information
circBase ID: -
Name: hsa_circ_PAN3
Synonym: circPAN3
Host Gene: PAN3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0020511
MONDO name: precursor B-cell acute lymphoblastic leukemia
Disease details: B-cell precursor acute lymphoblastic leukemia
Disease DO ID:
0080638
Disease MeSH ID:
-
Disease NCIt ID:
C8644
Disease ICD11 ID:
1099674056
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

bone marrow

Cell lines:

RS4;11; SEM

In vivo animal model:

patient-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ARID5B, RUNX1
Associated microRNA: miR-3198
Biological function: promotes cell survival and proliferation; inhibits apoptosis
Molecular mechanism: putative miRNA sponge activity inferred from predicted binding sites
Biological pathway or process:

apoptosis (inhibits); proliferation (promotes); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; divergent primers PCR; Transfection; Annexin V/PI Flow Cytometry; EdU Staining; Bioinformatics Analysis; Clinical Sample Validation; In Vivo Animal Model

Clinical significance:

-

Description:

circPAN3 is upregulated/ectopically expressed in KMT2A::AFF1 BCP-ALL and displays oncogenic activity in vitro. Knockdown increases apoptosis and reduces proliferation; bioinformatic predictions indicate involvement in miRNA-target gene regulatory networks.

Confidence score:

0.725

Other information
Title:

Functional relevance of circRNA aberrant expression in pediatric acute leukemia with KMT2A::AFF1 fusion.

Journal: Blood advances
Published: 2024
PubMed ID: 38029383
Study type:

combined biological and clinical study

Data availability: GSE213990; GSE213172; GSE110159; GSE77416; GSE13204
Code availability: -