circRNA basic information
circBase ID: hsa_circ_0000467
Name: hsa_circ_SKA3
Synonym: CircSKA3
Host Gene: SKA3
Genomic location(hg19): chr13:21742126-21742538:-
Genomic location(hg38): chr13:21167987-21168399:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

colorectal adenoma tissue; colorectal adenocarcinoma tissue; normal mucosa tissue; serum; serum exosomes

Cell lines:

HCT116; SW620; HCT8; SW480; NCM460; 293T; Helf; Caf

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SLUG, FUS
Associated microRNA: -
Biological function: promotes CRC cell migration, invasion, EMT, and metastasis; stabilizes SLUG and inhibits its ubiquitination-mediated degradation
Molecular mechanism: circSKA3 is retained in CRC cell cytoplasm via a cellmotif element (AGAAC) and directly binds SLUG protein to inhibit SLUG ubiquitination and proteasomal degradation, promoting EMT and metastasis; FUS binds circSKA3 motif to promote circularization
Biological pathway or process:

EMT (promotes); metastasis (promotes); migration (promotes); invasion (promotes); ubiquitination (inhibits)

Detected method:
Q
S
Validation methods:

circRNA-seq; RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; Transwell Assay; CCK8; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

high level of circSKA3 was significantly correlated with poor prognosis in CRC patients; decreased in serum of CRC patients with AUC 0.9674

Description:

circSKA3 (hsa_circ_0000467) is upregulated in CRC tumor tissues and mainly localizes to the cytoplasm. It directly binds SLUG via a cellmotif element to inhibit SLUG ubiquitination/proteasomal degradation, thereby promoting EMT, migration/invasion, and metastasis; FUS promotes circSKA3 circularization by binding a cis-motif.

Confidence score:

0.8829

Other information
Title:

Specific intracellular retention of circSKA3 promotes colorectal cancer metastasis by attenuating ubiquitination and degradation of SLUG.

Journal: Cell death & disease
Published: 2023
PubMed ID: 37973787
Study type:

combined biological and clinical study

Data availability: GSE100206; GSE100063; PRJNA1029464
Code availability: -