circRNA basic information
circBase ID: -
Name: hsa_circ_SATB1
Synonym: hsa circRNA 103306
Host Gene: SATB1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

HCT-116; HCT116-R; HCT116-P

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: target genes
Associated microRNA: hsa-miR-619-3p, hsa-miR-29b-1-5p, hsa-miR-370-3p, hsa-miR-30d-3p, hsa-miR-30a-3p
Biological function: Most upregulated circRNA in chemoresistant HCT116-R cells compared with parental HCT116-P cells; predicted to bind five miRNAs.
Molecular mechanism: Predicted miRNA sponge/miRNA binding mechanism based on bioinformatic prediction; no experimental interaction validation reported.
Biological pathway or process:

chemoresistance (promotes); ceRNA regulation (other)

Detected method:
M
Validation methods:

RNase R Treatment; Microarray; Bioinformatics Analysis

Clinical significance:

-

Description:

hsa circRNA 103306 was reported as the most upregulated circRNA in chemoresistant HCT116-R cells compared with parental HCT116-P cells, based on microarray profiling. The authors predicted five miRNAs that may bind this circRNA, suggesting a possible miRNA-sponge role, but no RT-qPCR or functional validation was reported for this circRNA.

Confidence score:

0.329

Other information
Title:

Identification of differentially expressed circular RNAs in chemoresistant colorectal cancer.

Journal: Epigenomics
Published: 2019
PubMed ID: 31020847
Study type:

biological research

Data availability: GSE120985
Code availability: -