circRNA basic information
circBase ID: hsa_circ_0009043
Name: hsa_circ_EXOC6B
Synonym: circEXOC6B
Host Gene: EXOC6B
Genomic location(hg19): chr2:72945231-72960247:-
Genomic location(hg38): chr2:72718102-72733118:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent noncancerous tissues; colon cancer tissues; subcutaneous tumors

Cell lines:

SW480; SW620; RKO; Caco-2; HCT116; LoVo; HT29

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: RRAGB, RRAGC, RRAGD, HIF1A, mTORC1
Associated microRNA: -
Biological function: Inhibits CRC cell growth and promotes 5-fluorouracil-induced apoptosis; enhances chemosensitivity to 5-FU.
Molecular mechanism: Binds RRAGB to interfere with RRAGB-RRAGC/D heterodimer formation, suppressing mTORC1 signaling and lowering HIF1A; antagonizes the HIF1A-RRAGB-mTORC1 positive feedback loop.
Biological pathway or process:

PI3K/AKT/mTOR (inhibits); apoptosis (promotes); proliferation (inhibits); chemoresistance (inhibits); drug resistance (inhibits); other pathway/process (inhibits)

Detected method:
Q
S
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; Mass Spectrometry; RIP (RNA Immunoprecipitation); Co-IP; Transfection; CCK8; EdU Staining; Colony Formation Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; In Vivo Animal Model; TUNEL; Western Blot; IHC (Immunohistochemistry); Survival Analysis; Bioinformatics Analysis; RNA-seq; Microarray

Clinical significance:

Lower circEXOC6B expression was associated with poor prognosis; circEXOC6B was an independent prognostic factor and associated with improved OS.

Description:

circEXOC6B (hsa_circ_0009043), derived from EXOC6B, is down-regulated in CRC tissues and its low expression correlates with worse outcomes. It suppresses CRC progression and enhances 5-FU sensitivity by binding RRAGB, disrupting RRAGB-RRAGC/D heterodimerization, inhibiting mTORC1 signaling and HIF1A, thereby antagonizing the HIF1A-RRAGB-mTORC1 positive feedback loop.

Confidence score:

0.8869

Other information
Title:

circEXOC6B interacting with RRAGB, an mTORC1 activator, inhibits the progression of colorectal cancer by antagonizing the HIF1A-RRAGB-mTORC1 positive feedback loop.

Journal: Molecular cancer
Published: 2022
PubMed ID: 35739524
Study type:

combined biological and clinical study

Data availability: GSE77661; Supplementary material available at 10.1186/s12943-022-01600-1
Code availability: -