circRNA basic information
circBase ID: hsa_circ_0006990
Name: hsa_circ_VAPA
Synonym: -
Host Gene: VAPA
Genomic location(hg19): chr18:9931806-9937063:+
Genomic location(hg38): chr18:9931809-9937066:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma / RCC
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; adjacent normal tissues; tumor samples; adjacent non-cancerous tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: CCND1, CYCS
Associated microRNA: hsa-mir-494, hsa-mir-34a
Biological function: Potential role in RCC development through a predicted ceRNA mechanism; expression was lower in RCC tissues overall but higher in oncocytoma type compared with other RCC types.
Molecular mechanism: Predicted ceRNA mechanism involving sponging of hsa-mir-494 and hsa-mir-34a to regulate CCND1 and CYCS.
Biological pathway or process:

ceRNA regulation (other); apoptosis (other); cell cycle (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

hsa_circ_0006990 had significantly lower expression in RCC patients with a history of kidney disease and higher expression in oncocytoma type compared with other RCC types.

Description:

hsa_circ_0006990 was significantly downregulated in RCC tissues and in ccRCC samples, although it showed higher expression in oncocytoma type relative to other RCC subtypes. The study predicts that it may affect RCC development through a ceRNA mechanism involving hsa-mir-494 and hsa-mir-34a with CCND1 and CYCS.

Confidence score:

0.4685

Other information
Title:

Expression analysis of hsa_circ_0020397, hsa_circ_0005986, hsa_circ_0003028, and hsa_circ_0006990 in renal cell carcinoma.

Journal: Experimental and molecular pathology
Published: 2023
PubMed ID: 36496205
Study type:

combined biological, clinical and bioinformatics study

Data availability: GSE781; GSE6344; GSE14994; GSE16441; GSE17816; GSE17818; GSE17895; GSE26574; GSE36895; GSE40435; GSE40914; GSE46699; GSE53000; GSE53757; GSE68417; GSE71963; GSE55138; GSE41282; supplementary materials; data available on request
Code availability: -