circRNA basic information
circBase ID: -
Name: hsa_circ_SOD2
Synonym: hsa_circRNA_004662
Host Gene: SOD2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005011
MONDO name: Crohn disease
Disease details: Crohn disease
Disease DO ID:
8778
Disease MeSH ID:
D003424
Disease NCIt ID:
C2965
Disease ICD11 ID:
1267652425
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells / PBMCs

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: mTOR pathway, MDR1
Associated microRNA: hsa-miR-4520-2-3p, hsa-miR-208b-5p, hsa-miR-4713-5p, hsa-miR-4659a-3p, hsa-miR-4659b-3p
Biological function: potential diagnostic biomarker of CD; candidate for differentiating CD from UC
Molecular mechanism: Predicted miRNA sponge with a circRNA-miRNA-mRNA network correlated with mTOR signaling; not experimentally validated.
Biological pathway or process:

mTOR (other); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Upregulated in PBMCs in CD vs HCs; diagnostic ROC AUC=0.85; higher in CD than UC and may differentiate CD from UC.

Description:

CircRNA_004662 (circ_004662) is up-regulated in PBMCs from Crohn disease patients and shows good diagnostic performance (AUC 0.85). It is higher in CD than in UC and is proposed to function via a predicted ceRNA network by sponging several miRNAs, potentially linking to the mTOR pathway (prediction only).

Confidence score:

0.5047

Other information
Title:

Circular RNA expression profile in peripheral blood mononuclear cells from Crohn disease patients.

Journal: Medicine
Published: 2019
PubMed ID: 31261517
Study type:

combined biological and clinical study

Data availability: -
Code availability: -