circRNA basic information
circBase ID: hsa_circ_0001633
Name: hsa_circ_SOBP
Synonym: circSOBP
Host Gene: SOBP
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021042
MONDO name: glioma
Disease details: glioma
Disease DO ID:
-
Disease MeSH ID:
D005910
Disease NCIt ID:
C3059
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

glioma tissue; normal brain tissue; serum; mouse brain tumor tissue

Cell lines:

U251; LN229; TJ905; SHG44; T98G; U373; U87; GBM-Y2; HEB; GL261; 293T

In vivo animal model:

cell line-derived xenograft; syngeneic model

circRNA-disease information
Expression pattern:
DN
Associated gene: TKFC, MDA5, IKKepsilon, TBK1, IRF3, IFN-I
Associated microRNA: -
Biological function: Suppresses glioma malignant phenotypes and tumorigenesis; inhibits glycolysis/Warburg effect and mitochondrial respiration; promotes IFN-I-mediated antitumor immunity (CD8+ T and NK activation).
Molecular mechanism: circSOBP binds TKFC protein, reduces TKFC protein level, disrupts TKFC-MDA5 interaction, thereby activating MDA5-mediated IKKepsilon/TBK1/IRF3 signaling and IFN-I transcription; simultaneously suppresses glycolysis/Warburg effect via TKFC.
Biological pathway or process:

glycolysis (inhibits); oxidative phosphorylation (inhibits); proliferation (inhibits); migration (inhibits); invasion (inhibits); apoptosis (promotes); immune regulation (promotes); other pathway/process (promotes)

Detected method:
Q
B
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Northern Blot; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Wound Healing Assay; TUNEL; Western Blot; Co-IP; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); IF (Immunofluorescence); ELISA; Survival Analysis; Bioinformatics Analysis

Clinical significance:

circSOBP is downregulated in glioma tissues and in patient serum, suggesting potential use as a glioma biomarker.

Description:

circSOBP is down-regulated in glioma tissues, glioma cell lines, and patient serum. It suppresses glioma proliferation/migration/invasion and glycolysis by binding TKFC, lowering TKFC protein and disrupting TKFC-MDA5 interaction to activate the IKKepsilon/TBK1/IRF3-IFN-I immune signaling, enhancing CD8+ T and NK antitumor responses in vivo.

Confidence score:

0.8941

Other information
Title:

CircSOBP suppresses the progression of glioma by disrupting glycolysis and promoting the MDA5-mediated immune response.

Journal: iScience
Published: 2023
PubMed ID: 37766977
Study type:

combined biological and clinical study

Data availability: GSE153692
Code availability: -