circRNA basic information
circBase ID: hsa_circ_0003641
Name: hsa_circ_ATM
Synonym: cATM / circular ATM
Host Gene: ATM
Genomic location(hg19): chr11:108098321-108106561:+
Genomic location(hg38): chr11:108227594-108235834:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005350
MONDO name: abdominal aortic aneurysm
Disease details: abdominal aortic aneurysm / AAA
Disease DO ID:
7693
Disease MeSH ID:
D017544
Disease NCIt ID:
-
Disease ICD11 ID:
1154633768
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

aorta tissue; serum

Cell lines:

THP1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ATM, p53, BCL-2
Associated microRNA: miR-567, miR-4677 5p, miR-4778 5p
Biological function: Contributes to an adaptive oxidative-stress response in AoSMCs, protects against oxidative stress-induced apoptosis and supports stress-resistant SMC phenotype in AAA.
Molecular mechanism: Regulation at ATM locus affecting ATM mRNA and ATM pathway activity (p53 phosphorylation), influencing apoptosis/survival; proposed miRNA-sponging model (binding sites predicted) but not fully validated in AoSMCs.
Biological pathway or process:

apoptosis (inhibits); other pathway/process (other)

Detected method:
Q
H
M
Validation methods:

Microarray; RNase R Treatment; divergent primers PCR; Sanger Sequencing; RT-qPCR; ISH (In Situ Hybridization); Nuclear-Cytoplasmic Fractionation; Digital PCR; Transfection; Western Blot; In Vivo Animal Model; CCK8

Clinical significance:

Circulating cATM was significantly higher in AAA patients, supporting its potential use as an AAA diagnostic biomarker; trend toward higher levels in ruptured AAA suggests possible negative prognostic indicator.

Description:

cATM (hsa_circ_0003641), derived from the ATM locus, is up-regulated in AAA aortic tissue, AAA-derived smooth muscle cells, and patient serum. Functionally, higher cATM is associated with reduced vulnerability to oxidative stress and reduced apoptosis in AAA-derived AoSMCs, while cATM knockdown increases apoptosis and alters ATM mRNA regulation, supporting its role as an adaptive stress-response signature and potential circulating biomarker for AAA.

Confidence score:

0.6816

Other information
Title:

The circular RNA Ataxia Telangiectasia Mutated regulates oxidative stress in smooth muscle cells in expanding abdominal aortic aneurysms.

Journal: Molecular therapy. Nucleic acids
Published: 2023
PubMed ID: 37680984
Study type:

combined biological and clinical study

Data availability: GSE236869; GSE237230; GSE237229
Code availability: -