circRNA basic information
circBase ID: hsa_circ_0003645
Name: hsa_circ_VPS35L
Synonym: circVPS35L / circRNA VPS35L
Host Gene: VPS35L
Genomic location(hg19): chr16:19656207-19663412:+
Genomic location(hg38): chr16:19644885-19652090:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer / NSCLC
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent tissues; peripheral blood; whole blood

Cell lines:

A549; LTEP-a-2; NCI-H1299; SPC-A-1; BEAS-2B

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: CircVPS35L is a stable peripheral blood-derived diagnostic biomarker for NSCLC; its low expression is correlated with tumor size, histology type, and TNM stage, and it can distinguish NSCLC from healthy controls and benign lung disease.
Molecular mechanism: circVPS35L is generated by backsplicing of VPS35L exons 23-26 and has a stable closed-loop circular RNA structure resistant to RNase R and with a longer half-life after actinomycin D treatment.
Biological pathway or process:

not specified

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Low circVPS35L expression is associated with tumor size, histology type, and TNM stage; blood-derived circVPS35L has diagnostic value for NSCLC and can distinguish NSCLC from benign lung disease, with better diagnostic performance than CYFR21-1, NSE, CEA, or their combined panel.

Description:

This study identifies hsa_circ_0003645/circVPS35L as a down-regulated circRNA in NSCLC tissues, cell lines, and peripheral blood. circVPS35L is a stable circular RNA derived from VPS35L exons 23-26 and shows diagnostic utility for distinguishing NSCLC from healthy controls and benign lung disease, outperforming conventional tumor markers in ROC analyses.

Confidence score:

0.6841

Other information
Title:

Peripheral Blood-Derived CircVPS35L as a Potential Diagnostic Biomarker for Non-Small Cell Lung Cancer.

Journal: Oncology
Published: 2023
PubMed ID: 37307805
Study type:

combined biological and clinical study

Data availability: GEO accession number: 112214; The data underlying this article are available in the article and from the corresponding author upon reasonable requests.
Code availability: -