circRNA basic information
circBase ID: hsa_circ_0001789
Name: hsa_circ_RAB11FIP1
Synonym: circ_0001789 / Circular RNA 0001789
Host Gene: RAB11FIP1
Genomic location(hg19): chr8:37734626-37735069:-
Genomic location(hg38): chr8:37877108-37877551:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric mucosa tissues; GC tissues; serum exosomes

Cell lines:

AGS; HGC27; MKN-45; MKN-74; GES-1; HUVECs

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PAK2 / AGO2
Associated microRNA: hsa-miR-140-3p
Biological function: promotes proliferation, migration, invasion, EMT and angiogenesis; supports tumorigenesis and metastasis; exosomal circ_0001789 mediates malignant phenotype in recipient cells
Molecular mechanism: circ_0001789 acts as a miRNA sponge for miR-140-3p, thereby upregulating PAK2; associated with AGO2-containing RISC; exosomal transfer increases circ_0001789 in recipient cells
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); EMT (promotes); angiogenesis (promotes); ceRNA regulation (promotes); metastasis (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Transwell Assay; Tube Formation Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; Clinical Sample Validation; Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Upregulation of circ_0001789 is associated with metastasis, advanced TNM stage, and poor prognosis; exosomal circ_0001789 shows diagnostic value (AUC > 0.8).

Description:

circ_0001789 is up-regulated in gastric cancer tissues, cells, and serum exosomes and correlates with metastasis and poor overall survival. It promotes malignant phenotypes (proliferation, migration/invasion, EMT, angiogenesis, tumorigenesis/metastasis) largely by sponging miR-140-3p to upregulate PAK2.

Confidence score:

0.8823

Other information
Title:

Circular RNA 0001789 sponges miR-140-3p and regulates PAK2 to promote the progression of gastric cancer.

Journal: Journal of translational medicine
Published: 2023
PubMed ID: 36740679
Study type:

combined biological and clinical study

Data availability: GSE83521; 10.1186/s12967-022-03853-2
Code availability: -