circRNA basic information
circBase ID: hsa_circ_0001481
Name: hsa_circ_EMB
Synonym: circEMB
Host Gene: EMB
Genomic location(hg19): chr5:49694940-49707217:-
Genomic location(hg38): chr5:50399106-50411383:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma / OS
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OSA tissues; adjacent normal tissues / paracancerous tissues; cancerous tissues

Cell lines:

hFOB1.19; 143B; U2OS; MNNG; MG63; Saos-2; HEK293T; U2OS/MTX

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: EGFR, Ago2
Associated microRNA: hsa-miR-3184-5p
Biological function: promotes proliferation, migration, invasion, metastasis and chemoresistance; inhibits apoptosis; promotes cell cycle progression
Molecular mechanism: circEMB acts as a miR-3184-5p sponge in an Ago2-containing complex, thereby upregulating EGFR and influencing Notch signaling and MTX resistance
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); apoptosis (inhibits); cell cycle (promotes); Notch (promotes); chemoresistance (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot; IHC (Immunohistochemistry); H&E Staining; In Vivo Animal Model; Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

high circEMB expression is associated with metastasis, advanced clinical stage, worse survival, and has ROC performance for distinguishing metastasis (AUC 0.703)

Description:

circEMB is up-regulated in osteosarcoma tissues/cells and promotes proliferation, invasion/migration, metastasis, and MTX resistance. It mainly functions as a cytoplasmic ceRNA by sponging miR-3184-5p in an Ago2-associated complex, thereby increasing EGFR expression and impacting Notch signaling. High circEMB expression correlates with metastasis and poor prognosis.

Confidence score:

0.8942

Other information
Title:

Circular RNA circEMB promotes osteosarcoma progression and metastasis by sponging miR-3184-5p and regulating EGFR expression.

Journal: Biomarker research
Published: 2023
PubMed ID: 36611218
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon reasonable request
Code availability: -