circRNA basic information
circBase ID: hsa_circ_0138960
Name: hsa_circ_GDA
Synonym: circRNA0138960
Host Gene: GDA
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues; paired adjacent noncancerous mucosal tissue samples

Cell lines:

AGS

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: GDA mRNA
Associated microRNA: -
Biological function: Promotes AGS gastric cancer cell proliferation and invasion in vitro; candidate oncogene in gastric cancer.
Molecular mechanism: circRNA0138960 positively correlates with and regulates its parental gene GDA mRNA expression; the authors speculate that it may modulate parental gene expression transcriptionally.
Biological pathway or process:

proliferation (promotes); invasion (promotes); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Microarray; FISH / smFISH; Clinical Sample Validation; Transfection; CCK8; Transwell Assay; ROC Analysis; Bioinformatics Analysis

Clinical significance:

circRNA0138960 showed diagnostic value for GC with an AUC of 0.647.

Description:

hsa_circ_0138960/circRNA0138960 is significantly up-regulated in gastric cancer tissues and preferentially localized in the cytoplasm of AGS cells. Its knockdown suppresses AGS cell proliferation and invasion, and its expression positively correlates with GDA mRNA. It shows modest diagnostic value for GC based on ROC analysis.

Confidence score:

0.7364

Other information
Title:

Analysis of co-expression networks for circular RNAs and mRNAs reveals that circular RNAs hsa_circ_0047905, hsa_circ_0138960 and has-circRNA7690-15 are candidate oncogenes in gastric cancer.

Journal: Cell cycle (Georgetown, Tex.)
Published: 2017
PubMed ID: 28980874
Study type:

combined biological and clinical study

Data availability: -
Code availability: -