circRNA basic information
circBase ID: hsa_circ_0007379
Name: hsa_circ_intergenic
Synonym: circ_0007379 / circ7379
Host Gene: -
Genomic location(hg19): chr14:35020919-35024118:-
Genomic location(hg38): chr14:34551713-34554912:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissues

Cell lines:

FHC; HT29; RKO; HCT116; SW480; SW620; LoVo; HCT8; LS123

In vivo animal model:

cell line-derived xenograft; patient-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: KSRP, RUNX1, DHX9, pri-miR-320a, pre-miR-320a, Drosha, Dicer
Associated microRNA: hsa-miR-320a
Biological function: Suppresses CRC cell growth/proliferation and metastasis (migration and invasion); inhibits tumor growth in vivo and in PDO/PDX models.
Molecular mechanism: Acts as an RNA scaffold that enhances KSRP-mediated processing of pri-miR-320a and pre-miR-320a, promoting miR-320a maturation and repressing RUNX1; circ7379 biogenesis depends on RCMs and is negatively regulated by DHX9.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; CCK8; Colony Formation Assay; Transwell Assay; RNA-seq; Western Blot; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); IF (Immunofluorescence); Co-IP; Bioinformatics Analysis; Cohort Study

Clinical significance:

Low circ7379 expression in CRC tissues is associated with larger tumor size, greater invasion depth, and advanced TNM stage; highlighted as a biomarker for predicting CRC progression.

Description:

circ_0007379 (circ7379; hsa_circ_0007379) is down-regulated in colorectal cancer and functions as a tumor suppressor. It binds KSRP and serves as a scaffold to promote pri-/pre-miR-320a processing, increasing mature miR-320a and thereby repressing RUNX1 to inhibit CRC proliferation and metastasis, including in PDO/PDX and xenograft models.

Confidence score:

0.898

Other information
Title:

Intergenic CircRNA Circ_0007379 Inhibits Colorectal Cancer Progression by Modulating miR-320a Biogenesis in a KSRP-Dependent Manner.

Journal: International journal of biological sciences
Published: 2023
PubMed ID: 37564198
Study type:

combined biological and clinical study

Data availability: GSE121895
Code availability: -