circRNA basic information
circBase ID: hsa_circ_0007006
Name: hsa_circ_DYM
Synonym: circPNIT
Host Gene: DYM
Genomic location(hg19): chr18:46783379-46808545:-
Genomic location(hg38): chr18:49257009-49282175:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005184
MONDO name: pancreatic ductal adenocarcinoma
Disease details: pancreatic ductal adenocarcinoma / PDAC
Disease DO ID:
3498, 3587
Disease MeSH ID:
D021441
Disease NCIt ID:
C9120
Disease ICD11 ID:
581089833
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PDAC tissues; normal adjacent tissues (NATs); serum (serum EVs)

Cell lines:

PANC-1; AsPC-1; Capan-2; MiaPaCa-2; BxPC-3; 293T

In vivo animal model:

cell line-derived xenograft; genetically engineered animal model; other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: Rab5B, CD109, TRPV1, DSCAML1, GFRalpha1, RET, FLOT1
Associated microRNA: -
Biological function: promotes axonogenesis and perineural invasion (PNI) in KRASG12D-mutant PDAC; facilitates neural metastasis/neurotropism
Molecular mechanism: circPNIT acts as a scaffold to link Rab5B and CD109, enabling lipid-raft/MVB-associated EV packaging and CD109+ EV secretion; CD109+ EVs target neurons via TRPV1 and circPNIT activates DSCAML1 transcription (via promoter binding and increased H3K9Ac), inducing axonogenesis and activating GFRalpha1/RET with downstream MAPK/ERK signaling
Biological pathway or process:

axonogenesis (promotes); metastasis (promotes); MAPK (promotes); ERK (promotes); other pathway/process (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; RNA Pull-Down; RIP (RNA Immunoprecipitation); Co-IP; Luciferase Reporter Assay; ChIP / ChIP-seq; Transfection; Transwell Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); ISH (In Situ Hybridization); Flow Cytometry(Non-apoptosis/cycle); Western Blot; Bioinformatics Analysis

Clinical significance:

Positively correlated with PNI severity and nerve density; high tissue/serum EV circPNIT predicts shorter OS and DFS and is an independent predictor of poor survival; potential diagnostic and predictive value for neuroinvasive KRASG12D PDAC

Description:

circPNIT (hsa_circ_0007006), a DYM-derived circRNA, is upregulated in KRASG12D PDAC tissues and serum EVs and correlates with PNI severity and poor survival. It scaffolds Rab5B and CD109 to promote lipid-raft/MVB-dependent loading into CD109+ EVs, which target neurons via TRPV1; in neurons, circPNIT enhances DSCAML1 transcription (with increased H3K9Ac), promotes axonogenesis, and activates the GFRalpha1/RET→MAPK/ERK signaling that facilitates PNI.

Confidence score:

0.8993

Other information
Title:

Endosomal Trafficking Bypassed by the RAB5B-CD109 Interplay Promotes Axonogenesis in KRAS-Mutant Pancreatic Cancer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Published: 2024
PubMed ID: 39488792
Study type:

combined biological and clinical study

Data availability: GSE234760; GSE251916
Code availability: -