circRNA basic information
circBase ID: -
Name: hsa_circ_TLK1
Synonym: circRNA TLK1 / mmu_circRNA_009932
Host Gene: TLK1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
1060198
MONDO name: ischemic stroke
Disease details: ischemic stroke
Disease DO ID:
-
Disease MeSH ID:
-
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

brain tissues; brain tissue; plasma; mouse plasma; ipsilateral cortex; ischemic cortex

Cell lines:

HEK293T

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: TIPARP / 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)-inducible poly (ADP-ribose) polymerase
Associated microRNA: miR-335-3p
Biological function: circTLK1 aggravates ischemic stroke-associated neuronal injury, increases cerebral infarction and neurological deficits, and its knockdown decreases infarct volumes, attenuates neuronal injury, improves neurological deficits, reduces brain atrophy, and preserves neuronal plasticity.
Molecular mechanism: circTLK1 acts as an endogenous miR-335-3p sponge, inhibits miR-335-3p activity, and increases TIPARP expression, thereby exacerbating neuronal injury after ischemic stroke.
Biological pathway or process:

apoptosis (promotes); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; RT-qPCR; Microarray; FISH / smFISH; IF (Immunofluorescence); IHC (Immunohistochemistry); Clinical Sample Validation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Western Blot; In Vivo Animal Model; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Plasma circTLK1 is increased in patients with AIS, shows diagnostic potential with ROC AUC of 0.868, and positively correlates with infarct volume.

Description:

circTLK1 is up-regulated in ischemic stroke models and in plasma from patients with AIS. It aggravates neuronal injury and neurological deficits by sponging miR-335-3p and increasing TIPARP expression, while circTLK1 knockdown reduces infarct volume, apoptosis-related injury, brain atrophy, and functional deficits. Clinically, elevated plasma circTLK1 shows diagnostic potential and correlates with larger infarct volume.

Confidence score:

0.8649

Other information
Title:

Circular RNA TLK1 Aggravates Neuronal Injury and Neurological Deficits after Ischemic Stroke via miR-335-3p/TIPARP.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience
Published: 2019
PubMed ID: 31311824
Study type:

combined biological and clinical study

Data availability: GSE115697; GSE98319; GSE131712
Code availability: -