circRNA basic information
circBase ID: hsa_circ_0057105
Name: hsa_circ_PDK1
Synonym: -
Host Gene: PDK1
Genomic location(hg19): chr2:173433468-173460751:+
Genomic location(hg38): chr2:172568740-172596023:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma / RCC
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ccRCC tumour tissue; normal adjacent kidney tissue; FFPE samples

Cell lines:

HK2; 293; Caki-1; A498; 769P; 786-O; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: COL1A1, VDAC2, AGO2
Associated microRNA: miR-577
Biological function: Enhances migration and invasion (metastatic ability) of RCC cells; activates EMT; increases ferroptosis sensitivity (especially to erastin).
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-577 to regulate downstream targets COL1A1 (EMT activation) and VDAC2 (ferroptosis sensitivity).
Biological pathway or process:

EMT (promotes); metastasis (promotes); ferroptosis (promotes); ceRNA regulation (other); migration (promotes); invasion (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Clinical Sample Validation; Cohort Study; Survival Analysis; Transfection; Transwell Assay; CCK8; IF (Immunofluorescence); RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Western Blot; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Bioinformatics Analysis; Rescue experiments

Clinical significance:

Higher hsa_circ_0057105 expression is associated with advanced TNM stages and higher Fuhrman grade, and is an independent prognostic factor for poor OS and RFS in ccRCC patients.

Description:

In RCC/ccRCC, hsa_circ_0057105 is up-regulated and mainly localized in the cytoplasm. It promotes migration/invasion and EMT while simultaneously increasing erastin-related ferroptosis sensitivity by sponging miR-577 and derepressing COL1A1 and VDAC2. High expression correlates with advanced stage and predicts poorer OS/RFS.

Confidence score:

0.8981

Other information
Title:

Hsa_circ_0057105 modulates a balance of epithelial-mesenchymal transition and ferroptosis vulnerability in renal cell carcinoma.

Journal: Clinical and translational medicine
Published: 2023
PubMed ID: 37496319
Study type:

combined biological and clinical study

Data availability: -
Code availability: -