circRNA basic information
circBase ID: hsa_circ_0009362
Name: hsa_circ_GNB1
Synonym: circGNB1
Host Gene: GNB1
Genomic location(hg19): chr1:1756835-1770677:-
Genomic location(hg38): chr1:1825396-1839238:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021042
MONDO name: glioma
Disease details: glioma
Disease DO ID:
-
Disease MeSH ID:
D005910
Disease NCIt ID:
C3059
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

glioma tissues; normal brain tissues

Cell lines:

U87; U251; GSC23; GSC27; GSC34; GSC45; GSC48; GSC33; U373; SHG44; LN229; NHA

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: XPR1, IL6, JAK2, STAT3, IGF2BP3
Associated microRNA: hsa-miR-515-5p, hsa-miR-582-3p
Biological function: promotes GSCs viability and proliferation; promotes invasion; promotes neurosphere formation/self-renewal; promotes tumorigenesis in vivo
Molecular mechanism: ceRNA mechanism: circGNB1 sponges miR-515-5p and miR-582-3p to upregulate XPR1; XPR1 promotes malignant phenotype via IL6-mediated JAK2/STAT3 signaling; IGF2BP3 binds circGNB1 and maintains its stability
Biological pathway or process:

JAK/STAT (promotes); proliferation (promotes); invasion (promotes); stemness (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RT-qPCR; RNase R Treatment; Sanger Sequencing; divergent primers PCR; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Actinomycin D / DRB Stability Assay; Transfection; CCK8; EdU Staining; Transwell Assay; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; Survival Analysis; Bioinformatics Analysis; ELISA; Western Blot; Colony Formation Assay; RNA-seq

Clinical significance:

High circGNB1 expression is associated with poor prognosis and shorter survival time in glioma patients.

Description:

circGNB1 (hsa_circ_0009362), derived from GNB1, is up-regulated in glioma/GBM and predicts shorter survival. It promotes GSC proliferation/viability, invasion and neurosphere formation by sponging miR-515-5p and miR-582-3p to increase XPR1, which enhances IL6 and activates JAK2/STAT3 signaling; IGF2BP3 binds circGNB1 and stabilizes it, reinforcing these oncogenic effects.

Confidence score:

0.8794

Other information
Title:

CircGNB1 facilitates the malignant phenotype of GSCs by regulating miR-515-5p/miR-582-3p-XPR1 axis.

Journal: Cancer cell international
Published: 2023
PubMed ID: 37407973
Study type:

combined biological and clinical study

Data availability: GSE146463; TCGA; CGGA; 10.1186/s12935-023-02970-2
Code availability: -